PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g08190.2
Common NameLR48_Vigan02g196700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 142aa    MW: 15790.8 Da    PI: 6.7813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g08190.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-162365349
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                    y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++  
  Vang06g08190.2 23 YLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAIAYDLS 65
                    77******.**********865...5******************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-202280IPR016177DNA-binding domain
SMARTSM003804.0E-262285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-262279IPR001471AP2/ERF domain
PROSITE profilePS5103220.3232279IPR001471AP2/ERF domain
PRINTSPR003675.3E-92334IPR001471AP2/ERF domain
PfamPF008472.1E-92364IPR001471AP2/ERF domain
CDDcd000185.11E-262378No hitNo description
PRINTSPR003675.3E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEDVPSLIYK NPIRRNSRRS TMYLGVRRRP WGRYAAEIRN PYTKERHWLG TFDTAEEAAI  60
AYDLSSINIS GINARTNFHY PFLSLPPPPI SLPPPPPPPT PELHQSVGVC PEMNSAFDGD  120
DESLVIASIL QSFSNSGNCS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-151978262ATERF1
2gcc_A3e-151978262ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511911.11e-100PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A0L9TZH21e-101A0A0L9TZH2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SNK51e-101A0A0S3SNK5_PHAAN; Uncharacterized protein
STRINGGLYMA20G31293.11e-68(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.13e-30ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]